| 1 | Salzburg | 54.8% (23) 35.7% (15) 2.4% (1) 7.1% (3) | 42 | 22.6 |
| 2 | NK Celje | 33.3% (6) 55.6% (10) 5.6% (1) | 18 | 22.8 |
| 3 | L. Zagreb | 43.5% (30) 43.5% (30) 10.1% (7) 2.9% (2) | 69 | 23.0 |
| 4 | Alkmaar | 36.8% (14) 52.6% (20) 10.5% (4) | 38 | 23.2 |
| 5 | Dynamo Kiev | 37.1% (23) 53.2% (33) 9.7% (6) | 62 | 23.2 |
| 6 | FC Flora | 40.6% (13) 43.8% (14) 9.4% (3) 6.2% (2) | 32 | 23.2 |
| 7 | Rapid Wien | 45.7% (16) 37.1% (13) 11.4% (4) 2.9% (1) | 35 | 23.4 |
| 8 | Celje | 25.0% (7) 67.9% (19) 7.1% (2) | 28 | 23.5 |
| 9 | C. Glasgow | 32.0% (16) 58.0% (29) 10.0% (5) | 50 | 23.6 |
| 10 | Midtjylland | 32.8% (20) 54.1% (33) 9.8% (6) 3.3% (2) | 61 | 23.9 |
| 11 | PAOK Saloniki | 37.3% (19) 41.2% (21) 17.6% (9) 3.9% (2) | 51 | 24.1 |
| 12 | D. Zagreb | 30.3% (20) 50.0% (33) 16.7% (11) 3.0% (2) | 66 | 24.1 |
| 13 | Kuopio PS | 26.1% (12) 56.5% (26) 8.7% (4) 4.3% (2) | 46 | 24.3 |
| 14 | Slavia Prag | 27.5% (14) 60.8% (31) 7.8% (4) 3.9% (2) | 51 | 24.3 |
| 15 | Y.B. Bern | 31.4% (11) 57.1% (20) 5.7% (2) 5.7% (2) | 35 | 24.4 |
| 16 | R. S. Belgrad | 37.2% (16) 34.9% (15) 27.9% (12) | 43 | 24.7 |
| 17 | M. Tel Aviv | 30.2% (13) 46.5% (20) 20.9% (9) 2.3% (1) | 43 | 24.8 |
| 18 | Besiktas | 37.5% (21) 35.7% (20) 23.2% (13) 3.6% (2) | 56 | 24.8 |
| 19 | FK Buducnost | 28.6% (8) 39.3% (11) 25.0% (7) | 28 | 25.0 |
| 20 | Ferencvárosi | 23.8% (10) 59.5% (25) 16.7% (7) | 42 | 25.0 |
| 21 | Djurgardens | 21.1% (8) 50.0% (19) 26.3% (10) 2.6% (1) | 38 | 25.3 |
| 22 | D. Tiflis | 27.3% (12) 43.2% (19) 15.9% (7) 2.3% (1) | 44 | 25.4 |
| 23 | L. Warschau | 32.7% (16) 34.7% (17) 20.4% (10) 12.2% (6) | 49 | 25.4 |
| 24 | Molde | 18.9% (7) 54.1% (20) 27.0% (10) | 37 | 25.5 |
| 25 | S. Tiraspol | 13.5% (5) 70.3% (26) 10.8% (4) 5.4% (2) | 37 | 25.6 |
| 26 | Olympiakos | 20.0% (11) 58.2% (32) 14.5% (8) 7.3% (4) | 55 | 25.6 |
| 27 | Benfica | 16.7% (10) 65.0% (39) 13.3% (8) 5.0% (3) | 60 | 25.6 |
| 28 | Floriana | 8.3% (1) 75.0% (9) 8.3% (1) 8.3% (1) | 12 | 25.8 |
| 29 | Dundalk | 11.8% (4) 61.8% (21) 14.7% (5) 5.9% (2) | 34 | 25.8 |
| 30 | KAA Gent | 22.2% (10) 55.6% (25) 20.0% (9) 2.2% (1) | 45 | 25.8 |
| 31 | Karabakh | 20.0% (7) 45.7% (16) 31.4% (11) 2.9% (1) | 35 | 25.9 |
| 32 | Astana | 23.5% (8) 41.2% (14) 17.6% (6) 5.9% (2) | 34 | 25.9 |
| 33 | SK SLovan | 14.7% (5) 61.8% (21) 23.5% (8) | 34 | 25.9 |
| 34 | FC Ararat-Arme | 19.2% (10) 55.8% (29) 19.2% (10) 5.8% (3) | 52 | 26.0 |
| 35 | Pilsen | 16.2% (6) 56.8% (21) 21.6% (8) 5.4% (2) | 37 | 26.0 |
| 36 | FK Rigas Futbo | 17.0% (9) 56.6% (30) 17.0% (9) 9.4% (5) | 53 | 26.1 |
| 37 | Krasnodar | 23.8% (10) 42.9% (18) 26.2% (11) 7.1% (3) | 42 | 26.1 |
| 38 | Fola Esch | 23.5% (8) 41.2% (14) 23.5% (8) 11.8% (4) | 34 | 26.1 |
| 39 | Riga FC | 19.6% (11) 50.0% (28) 19.6% (11) 10.7% (6) | 56 | 26.2 |
| 40 | Om. Nikosia | 28.6% (10) 34.3% (12) 25.7% (9) 11.4% (4) | 35 | 26.3 |
| 41 | Linfield | 21.4% (6) 46.4% (13) 17.9% (5) 10.7% (3) | 28 | 26.3 |
| 42 | Ludogorets | 9.3% (4) 62.8% (27) 20.9% (9) 4.7% (2) | 43 | 26.5 |
| 43 | Marijampole | 27.3% (9) 36.4% (12) 27.3% (9) 9.1% (3) | 33 | 26.5 |
| 44 | KF Drita | 4.3% (1) 60.9% (14) 34.8% (8) | 23 | 26.6 |
| 45 | Floriana FC | 100.0% (4) | 4 | 26.8 |
| 46 | Klaksvik | 15.4% (4) 50.0% (13) 23.1% (6) 7.7% (2) | 26 | 26.8 |
| 47 | FC Europa | 14.3% (3) 42.9% (9) 33.3% (7) 9.5% (2) | 21 | 27.0 |
| 48 | FK Sarajevo | 10.5% (2) 52.6% (10) 31.6% (6) 5.3% (1) | 19 | 27.1 |
| 49 | Brest | 14.3% (4) 39.3% (11) 28.6% (8) 14.3% (4) | 28 | 27.1 |
| 50 | Kratovo | 9.1% (1) 36.4% (4) 45.5% (5) | 11 | 27.2 |
| 51 | FK Tirana | 8.0% (2) 72.0% (18) 4.0% (1) 16.0% (4) | 25 | 27.4 |
| 52 | Cluj | 16.4% (9) 41.8% (23) 27.3% (15) 14.5% (8) | 55 | 27.6 |
| 53 | Connah's Quay | 11.1% (3) 37.0% (10) 33.3% (9) 18.5% (5) | 27 | 28.3 |
| 54 | KR Reykjavik | 12.5% (2) 25.0% (4) 25.0% (4) 37.5% (6) | 16 | 29.5 |
| 55 | Tre Fiori | 50.0% (7) 14.3% (2) 35.7% (5) | 14 | 29.9 |
| 56 | Inter Club de | 3.8% (2) 25.0% (13) 17.3% (9) 44.2% (23) | 52 | 31.9 |
Champions League-Qualifikation
